I guess you mean for the front panel USB connectors on the case?
Are the connectors labelled in any way?
Each USB port should have 4 wires and they are generally labelled G or Gd for ground, D+ for data positive, D- for data negative and V or Vcc or 5+ for the 5 volt rail. I have seen a variety of colours used, so don't rely on any comparison.
The header on the motherboard should have nine pins, five on one side and four on the other. Now, the pinouts depend on the motherboard model. If you can post this and any labelling info, I can help further